[INFO] fetching crate netcdf 0.5.1...
[INFO] checking netcdf-0.5.1 against master#af3c6e733a40e671550e0f0f5aeecaa13772ba56 for pr-74989
[INFO] extracting crate netcdf 0.5.1 into /workspace/builds/worker-8/source
[INFO] validating manifest of crates.io crate netcdf 0.5.1 on toolchain af3c6e733a40e671550e0f0f5aeecaa13772ba56
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+af3c6e733a40e671550e0f0f5aeecaa13772ba56" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate netcdf 0.5.1
[INFO] finished tweaking crates.io crate netcdf 0.5.1
[INFO] tweaked toml for crates.io crate netcdf 0.5.1 written to /workspace/builds/worker-8/source/Cargo.toml
[INFO] crate crates.io crate netcdf 0.5.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+af3c6e733a40e671550e0f0f5aeecaa13772ba56" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+af3c6e733a40e671550e0f0f5aeecaa13772ba56" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 84e3622ab534f0bd2053b5fd85a37e7fd773a966e789213d38284fe4010dfcf4
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "84e3622ab534f0bd2053b5fd85a37e7fd773a966e789213d38284fe4010dfcf4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "84e3622ab534f0bd2053b5fd85a37e7fd773a966e789213d38284fe4010dfcf4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "84e3622ab534f0bd2053b5fd85a37e7fd773a966e789213d38284fe4010dfcf4", kill_on_drop: false }`
[INFO] [stdout] 84e3622ab534f0bd2053b5fd85a37e7fd773a966e789213d38284fe4010dfcf4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+af3c6e733a40e671550e0f0f5aeecaa13772ba56" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fdba4fb5dd75fc5a3e085a4a30920479ea3c69abc9ea0d72a40c7113770bff38
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "fdba4fb5dd75fc5a3e085a4a30920479ea3c69abc9ea0d72a40c7113770bff38", kill_on_drop: false }`
[INFO] [stderr]    Compiling autocfg v1.0.0
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling pkg-config v0.3.18
[INFO] [stderr]    Compiling unicode-xid v0.2.0
[INFO] [stderr]    Compiling libloading v0.6.2
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling version_check v0.9.1
[INFO] [stderr]    Compiling regex-syntax v0.6.18
[INFO] [stderr]    Compiling syn v1.0.17
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]     Checking ppv-lite86 v0.2.6
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]    Compiling netcdf-sys v0.3.2
[INFO] [stderr]    Compiling ndarray v0.13.0
[INFO] [stderr]     Checking unicode-width v0.1.7
[INFO] [stderr]     Checking either v1.5.3
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]     Checking textwrap v0.11.0
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]    Compiling proc-macro2 v1.0.10
[INFO] [stderr]     Checking clap v2.33.0
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]    Compiling aho-corasick v0.7.13
[INFO] [stderr]    Compiling num-traits v0.2.11
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-integer v0.1.42
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.2
[INFO] [stderr]    Compiling proc-macro-error v1.0.2
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling quote v1.0.3
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking tempfile v3.1.0
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling syn-mid v0.5.0
[INFO] [stderr]    Compiling hdf5-sys v0.7.0
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-9f7a24b17be8cf24/build-script-build` (exit code: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55d393b09910 - std::backtrace_rs::backtrace::libunwind::trace::h452faf99f32e7c93
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96
[INFO] [stderr]      1:     0x55d393b09910 - std::backtrace_rs::backtrace::trace_unsynchronized::he40edc71437667a1
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/../../backtrace/src/backtrace/mod.rs:66
[INFO] [stderr]      2:     0x55d393b09910 - std::sys_common::backtrace::_print_fmt::h6c51d6ade71f46bf
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/sys_common/backtrace.rs:79
[INFO] [stderr]      3:     0x55d393b09910 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h3cd15d7003dec37a
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/sys_common/backtrace.rs:58
[INFO] [stderr]      4:     0x55d393b284cc - core::fmt::write::h1857a60b204f1b6a
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/core/src/fmt/mod.rs:1080
[INFO] [stderr]      5:     0x55d393b069a7 - std::io::Write::write_fmt::hac61caff894c35ae
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/io/mod.rs:1517
[INFO] [stderr]      6:     0x55d393b0bb90 - std::sys_common::backtrace::_print::haa2f390fb7957e3e
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/sys_common/backtrace.rs:61
[INFO] [stderr]      7:     0x55d393b0bb90 - std::sys_common::backtrace::print::h48c7cbbad9013bb1
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/sys_common/backtrace.rs:48
[INFO] [stderr]      8:     0x55d393b0bb90 - std::panicking::default_hook::{{closure}}::h8b7ff05a31e71d55
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/panicking.rs:208
[INFO] [stderr]      9:     0x55d393b0b8dc - std::panicking::default_hook::h2f00c78800d98e4c
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/panicking.rs:227
[INFO] [stderr]     10:     0x55d393b0c1f3 - std::panicking::rust_panic_with_hook::h4eaa635e4694aef3
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/panicking.rs:577
[INFO] [stderr]     11:     0x55d393a5c69c - std::panicking::begin_panic::{{closure}}::h4a2b8e53b24f8d7b
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/panicking.rs:506
[INFO] [stderr]     12:     0x55d393a42ea9 - std::sys_common::backtrace::__rust_end_short_backtrace::h34ea8dee038f9519
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/sys_common/backtrace.rs:153
[INFO] [stderr]     13:     0x55d393a5c5c7 - std::panicking::begin_panic::h322457316d9eb13f
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/panicking.rs:505
[INFO] [stderr]     14:     0x55d3938df26a - build_script_build::LibrarySearcher::try_locate_hdf5_library::h194a37f6c9e6c951
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549
[INFO] [stderr]     15:     0x55d3938e0bac - build_script_build::main::he3aeace68e639ab8
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647
[INFO] [stderr]     16:     0x55d3938e7a4b - core::ops::function::FnOnce::call_once::h5ed10907d22184e1
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/core/src/ops/function.rs:227
[INFO] [stderr]     17:     0x55d3938e527e - std::sys_common::backtrace::__rust_begin_short_backtrace::hd9fbc3cc1c702978
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/sys_common/backtrace.rs:137
[INFO] [stderr]     18:     0x55d3938e7431 - std::rt::lang_start::{{closure}}::h271df4533995a2ba
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/rt.rs:66
[INFO] [stderr]     19:     0x55d393b0c5f1 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::hecc21eb9018cc197
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/core/src/ops/function.rs:259
[INFO] [stderr]     20:     0x55d393b0c5f1 - std::panicking::try::do_call::h174ad655d084b5c7
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/panicking.rs:381
[INFO] [stderr]     21:     0x55d393b0c5f1 - std::panicking::try::h479e6054ce28de10
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/panicking.rs:345
[INFO] [stderr]     22:     0x55d393b0c5f1 - std::panic::catch_unwind::hb558ddea2b3e9c45
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/panic.rs:382
[INFO] [stderr]     23:     0x55d393b0c5f1 - std::rt::lang_start_internal::h163149047f0a8b61
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/rt.rs:51
[INFO] [stderr]     24:     0x55d3938e7407 - std::rt::lang_start::ha430cd50a52ae1fa
[INFO] [stderr]                                  at /rustc/af3c6e733a40e671550e0f0f5aeecaa13772ba56/library/std/src/rt.rs:65
[INFO] [stderr]     25:     0x55d3938e22da - main
[INFO] [stderr]     26:     0x7f4a0d71c0b3 - __libc_start_main
[INFO] [stderr]     27:     0x55d3938da0be - _start
[INFO] [stderr]     28:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "fdba4fb5dd75fc5a3e085a4a30920479ea3c69abc9ea0d72a40c7113770bff38", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fdba4fb5dd75fc5a3e085a4a30920479ea3c69abc9ea0d72a40c7113770bff38", kill_on_drop: false }`
[INFO] [stdout] fdba4fb5dd75fc5a3e085a4a30920479ea3c69abc9ea0d72a40c7113770bff38
